1. It will not cause any problem to determine your ownership to the flat, as these are secondary documents.
2. Your ownership is determined by the registered sale deed in your favour, which is the primary document, to prove your ownership title to the flat.
3. Contact the builder/developer at once through your confidant person in India, as you are outside India, and try to procure the completion certificate, occupancy certificate, Allotment letter, possession letter, etc.
4. You can sell the flat to a prospective buyer, since you possess a registered Sale Deed for the flat in your favour. You can get the Patta/Khata for the property from the jurisdictional Corporation/Municipality, after paying the admissible taxes by mutating your name as owner in the revenue records.