Firslty, though she has file several criminal cases against you, but still the fact that you filed divorce petition first would definitely give you an edge.
Secondly, as it is quite general that once you file any case irrespective of the nature whether civil or criminal, the other part may file false cases against you.
Thirdly, your lawyer should have filed it under 482 rather than filing an application.
Fourthly, if that application has been filed you may withdraw the same and file quashing under 482.
Fifthly, do not withdraw the divorce petition otherwise you may be looked as you were at fault.