If you are not satisfied with the report submitted by the government surveyor while surveying the property and marking the boundary as well as fixing the boundary stones, you should have expressed your objections in writing and preferred an appeal against the orders passed by the collector before the appellate authority.
If the appeal was not decided ion your favor then you could have approached high court with a writ petition seeking its direction to the concerned survey department to re-survey your property and fix the boundary stones as per the revenue records and the registration documents.
Your silence indicates that you have admitted and have no objections to the survey report submitted by the government surveyor, even now it is not late, with a petitions seeking to condone the delay in preferring the appeal, you can file an appeal before the appellate authority to get justice if you feel that there was an improper justice meted out to you.