1. The property was your father's self acquired property hence it is not ancestral property, therefore the claim made by your nephew is not maintainable in law and any dispute in this regard may not be tenable, he may fight a losing legal battle if he decides to go to court seeking partition or cancellation of the said gift deed.
You can always mention that on an oral; partition between you and your brother you were allotted the ground floor and the first floor to him, hence this gift deed to your wife is very much valid in the eyes of law., he cannot seek cancellation of the same for any reason.
2. The partition will consist all aspects which include UDS, common areas etc
3. Please remember that this property now belongs to you and your brother only, nobody has any rights to claim any share in it t least not during your lifetime.
4. Don't do that mistake because they re not entitled to any share in the property as a right, hence any such move will be deemed that you recognise them to have rights in the property, after which the property involving minor interest cannot be shared or transferred without court permission.
5. Now you both are entitled to an equal share in the property hence you can get the property prtitioned as it is now after which when the property is redeveloped then you can enter into an agreement with the builder for a share accordingly on the terms and conditions of the builder or the agreement.