1) If you have opened joint account and not mentioned any sharing ratio at the time of opening the account by default you both are 50-50% partner in that account.
2) Both can operate the account if you have online user and password, like you she can also operates the demat a/c.
3) Instead of opening joint account you should have kept your sister as a nominee.
4) If you have huge investment in the account either that you withdraw or open fresh demat account where you will be single owner and get share transfer from joint account to single account.