Since your mother purchased this landed property by a registered sale deed in the year 1993 and had been in possession and enjoyment of the same and also to prove her title, she was awarded the compensation also by the concerned competent authorities towards acquisition of a part of the land, her title is clear.
Your mother can file an injunction suit against the said person restraining him from interfering in yor mother's possession and enjoyment of the same.She may implead the government department also as a party to the suit seeking the relief of removal of the restrictions they have passed on this property to the registrar and also for declaration of title to her on the basis of the registered sale deed document.
You may discuss with an advocate in the local and proceed on the advises rendered.