Encumbrance certificate is the certificate issued by the Registrar pertaining to a particular piece of land about the transaction made during the period you apply for.
If there was sale, mortgage, settlement, Will, Gift or other deeds etc and the parties executed and beneficiaries, date of transaction, amount etc will be there for that period.
since builder has given you the EC you can after obtaining opinion from your lawyer purchase the property . obtain a certificate from your lawyer that title is clear and marketable . then take a call