Caught in a mix

: As a company we outsourced our manufacturing to a local company in Jaipur. After handing over the raw materials we asked them to fabricate it. Now one of the employees of that company because of non payment of his salary took the finished products with him. He is demanding the owner his salary which the owner is giving in the form of cheques which the employee is not accepting. I am caught in between and i have to deliver on my deal to the other company. Today the employee have filed an FIR in the police against the company and has demanded his salary.In the FIR he has mentioned that he has the products with him that he took over from factory. My concern is can i also do an FIR on the employee who has taken up my product illegally or shall i wait for the verdict. The owner of the alleged company has a bad records of payment in the market and we have walked out from them not to work in the future. We don't have any paper work for the contract with the manufacturing company. Kindly help